rna-seq by expectation-maximization (rsem) software Search Results


implementation of rsem  (OmicSoft Corporation)
90
OmicSoft Corporation implementation of rsem
Implementation Of Rsem, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rsem+algorithm/pm39380712-299-11-8
Average 90 stars, based on 1 article reviews
implementation of rsem - by Bioz Stars, 2026-10
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algorithms rsem  (Addgene inc)
94
Addgene inc algorithms rsem
Algorithms Rsem, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/AAV%3AITR-U6-sgRNA(backbone)-pCBh-Cre-WPRE-hGHpA-ITR+(Plasmid+%2360229)/pm31178114-192-189-186
Average 94 stars, based on 1 article reviews
algorithms rsem - by Bioz Stars, 2026-10
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normalized rna-seq by expectationmaximization (rsem) for genes  (Broad Institute Inc)
90
Broad Institute Inc normalized rna-seq by expectationmaximization (rsem) for genes
Normalized Rna Seq By Expectationmaximization (Rsem) For Genes, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/slide+seqv2/pm29346513-32-16-10
Average 90 stars, based on 1 article reviews
normalized rna-seq by expectationmaximization (rsem) for genes - by Bioz Stars, 2026-10
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rna-seq by expectation-maximization (rsem)  (DNAFORM Inc)
90
DNAFORM Inc rna-seq by expectation-maximization (rsem)
Rna Seq By Expectation Maximization (Rsem), supplied by DNAFORM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rna+seq+library+preparation/pmc12141861-83-31-42
Average 90 stars, based on 1 article reviews
rna-seq by expectation-maximization (rsem) - by Bioz Stars, 2026-10
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rna-seq by expectation maximization (rsem) algorithm  (OmicSoft Corporation)
90
OmicSoft Corporation rna-seq by expectation maximization (rsem) algorithm
Rna Seq By Expectation Maximization (Rsem) Algorithm, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rnaseq+pipelines/pmc05531402-269-21-32
Average 90 stars, based on 1 article reviews
rna-seq by expectation maximization (rsem) algorithm - by Bioz Stars, 2026-10
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rna-seq by expectation maximization (rsem)  (Broad Institute Inc)
90
Broad Institute Inc rna-seq by expectation maximization (rsem)
Rna Seq By Expectation Maximization (Rsem), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rna+seq/pmc09830272-59-17-14
Average 90 stars, based on 1 article reviews
rna-seq by expectation maximization (rsem) - by Bioz Stars, 2026-10
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rsem expected counts  (Broad Institute Inc)
90
Broad Institute Inc rsem expected counts
Rsem Expected Counts, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rsem+expected+counts/pmc06279400-272-4-16
Average 90 stars, based on 1 article reviews
rsem expected counts - by Bioz Stars, 2026-10
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primary rna-seq data  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare primary rna-seq data
Primary Rna Seq Data, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
primary rna-seq data - by Bioz Stars, 2026-10
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arraystudio  (OmicSoft Corporation)
90
OmicSoft Corporation arraystudio
Arraystudio, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
arraystudio - by Bioz Stars, 2026-10
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bowtie2  (SourceForge net)
90
SourceForge net bowtie2
In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using <t>Bowtie2</t> and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .
Bowtie2, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/bowtie2/pmc07718891-240-16-18
Average 90 stars, based on 1 article reviews
bowtie2 - by Bioz Stars, 2026-10
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log2 rsem data (rna-seq by expectation maximization)  (Broad Institute Inc)
90
Broad Institute Inc log2 rsem data (rna-seq by expectation maximization)
In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using <t>Bowtie2</t> and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .
Log2 Rsem Data (Rna Seq By Expectation Maximization), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/rna+sequencing+data/pmc06056412-289-9-22
Average 90 stars, based on 1 article reviews
log2 rsem data (rna-seq by expectation maximization) - by Bioz Stars, 2026-10
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raw rna sequencing rna seq gene level  (Broad Clinical Labs)
96
Broad Clinical Labs raw rna sequencing rna seq gene level
In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using <t>Bowtie2</t> and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .
Raw Rna Sequencing Rna Seq Gene Level, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+by+expectation-maximization+(rsem)+software/RNA+Sequencing/pmc07352604-200-3-16
Average 96 stars, based on 1 article reviews
raw rna sequencing rna seq gene level - by Bioz Stars, 2026-10
96/100 stars
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Image Search Results


In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using Bowtie2 and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .

Journal: Scientific Reports

Article Title: De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense

doi: 10.1038/s41598-020-78118-3

Figure Lengend Snippet: In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using Bowtie2 and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .

Article Snippet: The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using Bowtie2 ( https://sourceforge.net/projects/bowtie-bio/ ) and abundance was calculated using RSEM (RNA-Seq by Expectation–Maximization- http://deweylab.github.io/RSEM/package ).

Techniques: In Silico, Expressing, Control, Gene Expression, Generated